| TF name | Position | PWM scan score |
| GadE | 225-244 | 11.394 |
| CysB | 353-394 | 11.094 |
| FruR | 12-29 | 10.847 |
| CpxR | 158-172 | 9.748 |
| OxyR | 351-395 | 9.575 |
| GcvA | 223-251 | 9.149 |
| SoxS | 367-384 | 8.928 |
| Lrp | 274-285 | 8.594 |
| PhoP | 375-391 | 8.576 |
| MarA | 193-213 | 8.088 |
| IHF | 377-389 | 8.080 |
| ArgP | 231-243 | 7.961 |
| FNR | 226-247 | 7.892 |
| H-NS | 383-397 | 7.887 |
| Fis | 227-247 | 7.857 |
| MetJ | 389-396 | 7.714 |
| UlaR | 377-396 | 7.674 |
| MelR | 60-77 | 7.545 |
| OmpR | 72-91 | 7.416 |
| PhoB | 372-391 | 7.400 |
| ArgR | 2-17 | 7.264 |
| RcsB | 68-81 | 6.966 |
| GntR | 65-84 | 6.918 |
| Nac | 72-86 | 6.854 |
| Ada | 52-79 | 6.820 |
| XylR | 155-172 | 6.787 |
| NarL | 379-385 | 6.515 |
| RhaS | 145-161 | 6.418 |
| Rob | 221-241 | 6.386 |
| LacI | 28-48 | 6.376 |
| TorR | 73-82 | 6.222 |
| DnaA | 39-47 | 6.153 |
| TrpR | 274-291 | 6.138 |
| CRP | 8-29 | 6.092 |
| UxuR | 90-107 | 5.997 |
| AgaR | 316-339 | 5.705 |
| AraC | 317-334 | 5.124 |
| MalT | 112-121 | 5.038 |
| PspF | 223-239 | 5.036 |