| TF name | Position | PWM scan score |
| FNR | 331-352 | 10.981 |
| FadR | 191-207 | 10.685 |
| CRP | 368-389 | 10.185 |
| ArgP | 378-390 | 8.997 |
| CueR | 176-194 | 8.311 |
| RhaS | 185-201 | 7.720 |
| Lrp | 180-191 | 7.635 |
| Rob | 55-75 | 7.596 |
| SoxS | 179-196 | 7.391 |
| H-NS | 378-392 | 7.331 |
| MetJ | 215-222 | 7.198 |
| AraC | 233-250 | 7.155 |
| GalR | 243-258 | 6.904 |
| GalS | 243-258 | 6.904 |
| Nac | 375-389 | 6.684 |
| DnaA | 63-71 | 6.527 |
| Fis | 274-294 | 6.412 |
| RcsB | 281-294 | 6.353 |
| MarA | 95-115 | 6.260 |
| PhoP | 62-78 | 6.185 |
| NarL | 86-92 | 6.169 |
| NtrC | 4-20 | 5.663 |
| MelR | 209-226 | 5.638 |
| GntR | 112-131 | 5.473 |
| PurR | 96-111 | 5.440 |
| PhoB | 380-399 | 5.028 |
| DeoR | 380-395 | 5.011 |