| TF name | Position | PWM scan score |
| TrpR | 139-156 | 14.852 |
| PurR | 122-137 | 12.684 |
| DcuR | 99-153 | 10.316 |
| MetJ | 165-172 | 10.091 |
| UxuR | 266-283 | 9.972 |
| GlpR | 176-195 | 9.752 |
| OmpR | 52-71 | 9.732 |
| DnaA | 365-373 | 9.566 |
| SoxS | 303-320 | 9.293 |
| GalR | 289-304 | 9.185 |
| GalS | 289-304 | 9.185 |
| TyrR | 78-99 | 9.047 |
| NarP | 341-347 | 8.841 |
| H-NS | 214-228 | 8.828 |
| FNR | 335-356 | 8.503 |
| IHF | 355-367 | 8.093 |
| Rob | 347-367 | 8.069 |
| MalT | 16-25 | 7.894 |
| AraC | 168-185 | 7.817 |
| Ada | 165-192 | 7.726 |
| MarA | 301-321 | 7.666 |
| PspF | 74-90 | 7.624 |
| AgaR | 41-64 | 7.460 |
| NarL | 385-391 | 7.309 |
| Lrp | 40-51 | 7.131 |
| ArgP | 333-345 | 7.053 |
| ModE | 33-59 | 6.802 |
| ArcA | 167-227 | 6.747 |
| PhoB | 75-94 | 6.584 |
| FruR | 356-373 | 6.435 |
| GadE | 155-174 | 6.388 |
| Nac | 192-206 | 6.305 |
| IdnR | 173-188 | 6.180 |
| UlaR | 370-389 | 6.053 |
| NagC | 161-183 | 5.982 |
| NtrC | 180-196 | 5.748 |
| Fis | 134-154 | 5.529 |
| CRP | 176-197 | 5.455 |
| GcvA | 214-242 | 5.262 |
| Mlc | 127-149 | 5.240 |