| TF name | Position | PWM scan score |
| IHF | 222-234 | 12.152 |
| FruR | 65-82 | 12.049 |
| AgaR | 224-247 | 9.957 |
| OmpR | 320-339 | 9.732 |
| DnaA | 292-300 | 9.055 |
| TyrR | 346-367 | 9.047 |
| UlaR | 229-248 | 9.035 |
| GlpR | 89-108 | 8.783 |
| NorR | 225-241 | 8.617 |
| FNR | 305-326 | 8.154 |
| MalT | 284-293 | 7.894 |
| PspF | 342-358 | 7.624 |
| PhoB | 199-218 | 7.571 |
| PurR | 348-363 | 7.278 |
| GalS | 173-188 | 7.194 |
| GalR | 173-188 | 7.194 |
| Lrp | 308-319 | 7.131 |
| IdnR | 215-230 | 7.032 |
| CytR | 146-185 | 6.834 |
| ModE | 301-327 | 6.802 |
| H-NS | 256-270 | 6.717 |
| SoxS | 156-173 | 6.603 |
| ArgP | 353-365 | 6.589 |
| CysB | 184-225 | 6.426 |
| PhoP | 208-224 | 6.412 |
| MetJ | 258-265 | 6.073 |
| NarL | 324-330 | 5.864 |
| RcsB | 197-210 | 5.801 |
| NarP | 339-345 | 5.746 |
| UxuR | 138-155 | 5.464 |
| AraC | 331-348 | 5.342 |
| CueR | 50-68 | 5.238 |
| CRP | 231-252 | 5.193 |
| ArcA | 304-364 | 5.088 |
| NtrC | 117-133 | 5.008 |