| TF name | Position | PWM scan score |
| MalT | 271-280 | 11.614 |
| GalS | 242-257 | 10.342 |
| GalR | 242-257 | 10.342 |
| IHF | 58-70 | 9.431 |
| OmpR | 377-396 | 9.099 |
| DnaA | 86-94 | 8.576 |
| GadE | 378-397 | 8.089 |
| MetJ | 90-97 | 7.682 |
| Fis | 107-127 | 7.596 |
| FhlA | 15-54 | 7.298 |
| ArgP | 386-398 | 7.059 |
| RcsB | 294-307 | 6.818 |
| Ada | 113-140 | 6.382 |
| TorR | 276-285 | 6.366 |
| NtrC | 110-126 | 6.171 |
| GntR | 44-63 | 5.913 |
| Lrp | 81-92 | 5.750 |
| PhoB | 280-299 | 5.344 |
| UlaR | 280-299 | 5.301 |
| H-NS | 378-392 | 5.253 |