| TF name | Position | PWM scan score |
| RhaS | 162-178 | 10.971 |
| LexA | 118-137 | 8.319 |
| AraC | 174-191 | 7.881 |
| ArgR | 101-116 | 7.850 |
| TorR | 357-366 | 7.186 |
| FadR | 226-242 | 7.115 |
| DnaA | 326-334 | 6.944 |
| NarP | 385-391 | 6.488 |
| NarL | 163-169 | 6.415 |
| RcsB | 379-392 | 5.906 |
| PurR | 175-190 | 5.885 |
| Rob | 339-359 | 5.535 |
| CueR | 41-59 | 5.424 |
| MalT | 58-67 | 5.125 |
| Fis | 371-391 | 5.101 |
| GalR | 146-161 | 5.024 |
| GalS | 146-161 | 5.024 |