| TF name | Position | PWM scan score |
| PhoB | 377-396 | 10.357 |
| FNR | 374-395 | 9.621 |
| ModE | 211-237 | 9.415 |
| MalT | 264-273 | 9.106 |
| PhoP | 242-258 | 9.104 |
| CpxR | 382-396 | 8.972 |
| SoxS | 269-286 | 8.965 |
| OmpR | 267-286 | 8.924 |
| MetJ | 52-59 | 8.626 |
| TyrR | 371-392 | 8.485 |
| AraC | 316-333 | 8.408 |
| CueR | 34-52 | 8.095 |
| IHF | 282-294 | 8.072 |
| Mlc | 273-295 | 8.028 |
| Rob | 322-342 | 7.874 |
| PspF | 37-53 | 7.624 |
| NarL | 103-109 | 7.577 |
| DeoR | 382-397 | 7.465 |
| NagC | 374-396 | 7.363 |
| Fis | 232-252 | 7.331 |
| TorR | 111-120 | 7.143 |
| RcsB | 385-398 | 7.030 |
| GntR | 288-307 | 6.511 |
| AgaR | 367-390 | 6.508 |
| IdnR | 371-386 | 6.192 |
| Lrp | 285-296 | 6.122 |
| CRP | 1-22 | 5.956 |
| DnaA | 216-224 | 5.954 |
| NtrC | 29-45 | 5.939 |
| UxuR | 109-126 | 5.918 |
| Nac | 248-262 | 5.392 |
| H-NS | 92-106 | 5.384 |
| UlaR | 42-61 | 5.355 |
| FadR | 360-376 | 5.026 |