| TF name | Position | PWM scan score |
| OmpR | 191-210 | 14.607 |
| TyrR | 368-389 | 11.724 |
| CysB | 321-362 | 11.085 |
| GalR | 272-287 | 10.862 |
| GalS | 272-287 | 10.862 |
| PurR | 272-287 | 10.739 |
| RcsB | 369-382 | 10.650 |
| AraC | 185-202 | 9.803 |
| Rob | 241-261 | 9.545 |
| IHF | 326-338 | 9.531 |
| Lrp | 368-379 | 9.457 |
| TorR | 384-393 | 9.277 |
| LacI | 125-145 | 9.210 |
| H-NS | 191-205 | 9.158 |
| XylR | 187-204 | 9.149 |
| Nac | 255-269 | 8.456 |
| NarP | 209-215 | 8.308 |
| Fis | 24-44 | 7.964 |
| ArcA | 314-374 | 7.799 |
| RhaS | 298-314 | 7.486 |
| ArgP | 192-204 | 7.046 |
| DnaA | 98-106 | 6.819 |
| MetR | 179-202 | 6.631 |
| MalT | 86-95 | 6.440 |
| NarL | 217-223 | 5.999 |
| Mlc | 296-318 | 5.521 |
| SoxS | 291-308 | 5.398 |
| UlaR | 31-50 | 5.355 |
| MarA | 247-267 | 5.095 |