| TF name | Position | PWM scan score |
| IHF | 162-174 | 10.667 |
| AraC | 38-55 | 10.493 |
| Fur | 365-379 | 9.295 |
| ArgP | 170-182 | 9.252 |
| IdnR | 357-372 | 8.859 |
| GlpR | 364-383 | 8.556 |
| OmpR | 362-381 | 8.544 |
| XylR | 251-268 | 8.458 |
| PhoB | 374-393 | 8.206 |
| Lrp | 254-265 | 8.028 |
| CpxR | 230-244 | 7.754 |
| UlaR | 181-200 | 7.735 |
| MelR | 159-176 | 7.588 |
| FNR | 169-190 | 7.389 |
| GadE | 349-368 | 7.355 |
| H-NS | 365-379 | 7.321 |
| PhoP | 372-388 | 7.215 |
| NorR | 221-237 | 7.174 |
| NarL | 366-372 | 7.080 |
| NarP | 235-241 | 7.057 |
| Nac | 363-377 | 6.866 |
| AgaR | 250-273 | 6.680 |
| CRP | 356-377 | 6.592 |
| Fis | 228-248 | 6.473 |
| PspF | 175-191 | 6.334 |
| MalT | 297-306 | 6.330 |
| GntR | 41-60 | 6.007 |
| Rob | 126-146 | 5.763 |
| LacI | 336-356 | 5.670 |
| TorR | 345-354 | 5.587 |
| SoxS | 273-290 | 5.508 |
| DnaA | 219-227 | 5.459 |
| FadR | 152-168 | 5.261 |
| MarA | 369-389 | 5.099 |
| MetJ | 14-21 | 5.093 |
| FruR | 78-95 | 5.044 |