| TF name | Position | PWM scan score |
| NagC | 66-88 | 9.896 |
| PhoP | 240-256 | 9.889 |
| DeoR | 194-209 | 9.657 |
| GlpR | 334-353 | 9.485 |
| NarP | 219-225 | 8.877 |
| UlaR | 320-339 | 8.458 |
| Rob | 360-380 | 8.383 |
| FruR | 293-310 | 8.132 |
| FNR | 335-356 | 8.120 |
| LacI | 192-212 | 8.113 |
| Nac | 383-397 | 7.848 |
| PspF | 190-206 | 7.757 |
| NarL | 180-186 | 7.577 |
| Lrp | 239-250 | 7.397 |
| PhoB | 230-249 | 7.236 |
| MetR | 153-176 | 7.027 |
| MalT | 258-267 | 6.708 |
| CRP | 227-248 | 6.566 |
| DnaA | 271-279 | 6.355 |
| ArgP | 238-250 | 6.125 |
| NtrC | 136-152 | 5.675 |
| CueR | 376-394 | 5.370 |
| FadR | 86-102 | 5.251 |
| IHF | 85-97 | 5.082 |