| TF name | Position | PWM scan score |
| ArcA | 333-393 | 14.082 |
| OmpR | 227-246 | 11.840 |
| FNR | 28-49 | 11.539 |
| CRP | 112-133 | 10.912 |
| Mlc | 316-338 | 10.087 |
| DnaA | 377-385 | 9.566 |
| Rob | 330-350 | 8.788 |
| GntR | 119-138 | 8.733 |
| ArgP | 331-343 | 8.494 |
| Fis | 230-250 | 8.198 |
| SoxS | 143-160 | 7.636 |
| GlpR | 114-133 | 7.168 |
| RhaS | 317-333 | 6.915 |
| NarL | 204-210 | 6.881 |
| PurR | 260-275 | 6.824 |
| PhoP | 376-392 | 6.622 |
| Lrp | 49-60 | 6.562 |
| MarA | 158-178 | 6.392 |
| FadR | 183-199 | 6.287 |
| TyrR | 222-243 | 6.188 |
| RcsB | 203-216 | 6.112 |
| XylR | 368-385 | 6.104 |
| H-NS | 133-147 | 6.079 |
| IHF | 148-160 | 6.041 |
| NorR | 21-37 | 5.789 |
| NtrC | 82-98 | 5.682 |
| GalR | 114-129 | 5.560 |
| GalS | 114-129 | 5.560 |
| MetJ | 212-219 | 5.316 |
| Nac | 288-302 | 5.274 |
| UlaR | 289-308 | 5.119 |
| GcvA | 368-396 | 5.094 |