| TF name | Position | PWM scan score |
| MetR | 137-160 | 12.264 |
| CueR | 323-341 | 12.199 |
| MarA | 253-273 | 10.606 |
| Rob | 154-174 | 10.444 |
| RcsB | 290-303 | 9.943 |
| NtrC | 248-264 | 9.550 |
| MelR | 367-384 | 8.741 |
| UlaR | 286-305 | 8.596 |
| H-NS | 252-266 | 7.570 |
| Lrp | 120-131 | 6.942 |
| FadR | 365-381 | 6.922 |
| IHF | 331-343 | 6.914 |
| PhoP | 15-31 | 6.773 |
| AraC | 290-307 | 6.652 |
| NarP | 391-397 | 6.598 |
| PhoB | 279-298 | 6.538 |
| TorR | 195-204 | 6.460 |
| MetJ | 290-297 | 6.318 |
| CRP | 13-34 | 5.827 |
| XylR | 366-383 | 5.803 |
| Fis | 159-179 | 5.700 |
| GlpR | 252-271 | 5.621 |
| NarL | 351-357 | 5.139 |
| RhaS | 25-41 | 5.078 |