| TF name | Position | PWM scan score |
| MarA | 51-71 | 10.342 |
| Nac | 82-96 | 9.200 |
| SoxS | 370-387 | 7.961 |
| Lrp | 5-16 | 7.939 |
| H-NS | 383-397 | 7.656 |
| FNR | 376-397 | 7.483 |
| MetR | 326-349 | 7.419 |
| CRP | 377-398 | 7.403 |
| DnaA | 293-301 | 7.282 |
| DeoR | 54-69 | 7.240 |
| NarP | 174-180 | 7.162 |
| Fis | 135-155 | 6.991 |
| NarL | 382-388 | 6.718 |
| Rob | 286-306 | 6.649 |
| NagC | 366-388 | 6.646 |
| MalT | 244-253 | 6.540 |
| ModE | 223-249 | 6.397 |
| CueR | 66-84 | 6.177 |
| FruR | 108-125 | 5.878 |
| MetJ | 136-143 | 5.470 |
| TyrR | 373-394 | 5.306 |
| TorR | 343-352 | 5.202 |
| CpxR | 3-17 | 5.173 |