| TF name | Position | PWM scan score |
| ArcA | 220-280 | 17.176 |
| H-NS | 218-232 | 14.926 |
| NagC | 205-227 | 12.417 |
| Mlc | 195-217 | 12.255 |
| CytR | 216-255 | 11.881 |
| Nac | 36-50 | 11.246 |
| IHF | 242-254 | 10.630 |
| SoxS | 248-265 | 10.433 |
| CysB | 194-235 | 10.290 |
| OmpR | 205-224 | 9.399 |
| PhoP | 240-256 | 9.013 |
| AraC | 71-88 | 8.828 |
| NarL | 176-182 | 8.755 |
| Fis | 243-263 | 8.536 |
| CRP | 196-217 | 8.435 |
| Lrp | 205-216 | 8.426 |
| ArgR | 224-239 | 8.422 |
| GcvA | 247-275 | 8.375 |
| RcsB | 194-207 | 8.188 |
| ArgP | 309-321 | 7.907 |
| NarP | 121-127 | 7.885 |
| FNR | 205-226 | 7.535 |
| MarA | 331-351 | 7.467 |
| TorR | 204-213 | 7.050 |
| CpxR | 330-344 | 6.492 |
| UlaR | 91-110 | 6.463 |
| NorR | 213-229 | 6.094 |
| GlpR | 210-229 | 5.926 |
| XylR | 345-362 | 5.636 |
| RhaS | 5-21 | 5.596 |
| LacI | 147-167 | 5.569 |
| MetJ | 339-346 | 5.516 |
| DeoR | 208-223 | 5.439 |
| GadE | 215-234 | 5.417 |
| MetR | 274-297 | 5.303 |
| Rob | 333-353 | 5.270 |
| AgaR | 194-217 | 5.175 |