| TF name | Position | PWM scan score |
| LacI | 211-231 | 13.171 |
| FNR | 336-357 | 10.024 |
| GlpR | 93-112 | 9.561 |
| MetJ | 300-307 | 9.497 |
| CRP | 14-35 | 8.671 |
| FruR | 18-35 | 8.609 |
| NarP | 228-234 | 8.154 |
| CysB | 92-133 | 7.874 |
| MarA | 196-216 | 7.857 |
| GalS | 136-151 | 7.775 |
| GalR | 136-151 | 7.775 |
| Fis | 342-362 | 7.404 |
| NarL | 370-376 | 7.336 |
| XylR | 80-97 | 7.095 |
| CueR | 7-25 | 6.710 |
| Nac | 232-246 | 6.666 |
| CpxR | 93-107 | 6.464 |
| ModE | 356-382 | 6.370 |
| RcsB | 51-64 | 6.229 |
| Lrp | 50-61 | 6.201 |
| GntR | 177-196 | 5.814 |
| DnaA | 110-118 | 5.767 |
| IHF | 17-29 | 5.722 |
| Fur | 379-393 | 5.576 |
| NorR | 383-399 | 5.312 |