| TF name | Position | PWM scan score |
| MarA | 316-336 | 13.655 |
| GlpR | 300-319 | 12.386 |
| IHF | 151-163 | 10.071 |
| H-NS | 306-320 | 9.913 |
| MelR | 298-315 | 9.719 |
| SoxS | 294-311 | 9.635 |
| FNR | 301-322 | 9.500 |
| TrpR | 54-71 | 8.968 |
| AgaR | 178-201 | 8.488 |
| CpxR | 262-276 | 8.303 |
| XylR | 185-202 | 8.256 |
| PspF | 210-226 | 7.840 |
| RcsB | 304-317 | 7.698 |
| ArgP | 150-162 | 7.447 |
| DnaA | 261-269 | 7.282 |
| CRP | 308-329 | 7.044 |
| NarL | 306-312 | 6.718 |
| Fis | 140-160 | 6.640 |
| CueR | 276-294 | 6.623 |
| PhoB | 20-39 | 6.499 |
| Lrp | 304-315 | 6.377 |
| RhaS | 240-256 | 6.226 |
| ArgR | 303-318 | 6.205 |
| NtrC | 208-224 | 6.006 |
| Rob | 253-273 | 5.672 |
| GadE | 104-123 | 5.640 |
| NarP | 203-209 | 5.627 |
| FadR | 80-96 | 5.563 |
| MetR | 241-264 | 5.461 |
| MetJ | 106-113 | 5.350 |
| MalT | 278-287 | 5.312 |
| TorR | 127-136 | 5.209 |
| LacI | 164-184 | 5.102 |