| TF name | Position | PWM scan score |
| ArcA | 333-393 | 12.370 |
| ArgR | 133-148 | 11.755 |
| DnaA | 276-284 | 10.953 |
| H-NS | 366-380 | 10.518 |
| FadR | 282-298 | 10.093 |
| Lrp | 257-268 | 9.604 |
| AgaR | 258-281 | 9.587 |
| IHF | 367-379 | 8.557 |
| XylR | 267-284 | 8.536 |
| OmpR | 137-156 | 8.220 |
| Ada | 71-98 | 8.045 |
| UlaR | 251-270 | 7.991 |
| TorR | 299-308 | 7.526 |
| Rob | 370-390 | 7.370 |
| GadE | 371-390 | 7.340 |
| MalT | 130-139 | 7.283 |
| CpxR | 292-306 | 7.240 |
| SoxS | 362-379 | 7.237 |
| GalR | 178-193 | 7.215 |
| GalS | 178-193 | 7.215 |
| Nac | 326-340 | 7.059 |
| IdnR | 132-147 | 6.941 |
| MarA | 377-397 | 6.614 |
| Fis | 100-120 | 6.554 |
| PhoP | 362-378 | 6.549 |
| MetR | 72-95 | 6.527 |
| RcsB | 258-271 | 6.505 |
| NarL | 205-211 | 6.494 |
| MetJ | 97-104 | 6.419 |
| GntR | 257-276 | 6.407 |
| DeoR | 349-364 | 6.134 |
| NorR | 83-99 | 6.029 |
| ModE | 372-398 | 5.934 |
| NagC | 33-55 | 5.761 |
| FNR | 259-280 | 5.180 |