| TF name | Position | PWM scan score |
| PurR | 331-346 | 13.405 |
| Rob | 322-342 | 9.616 |
| PhoB | 350-369 | 9.163 |
| IHF | 331-343 | 8.473 |
| Fur | 374-388 | 8.083 |
| NorR | 75-91 | 7.765 |
| Lrp | 142-153 | 7.655 |
| NarL | 139-145 | 7.577 |
| MarA | 139-159 | 7.502 |
| XylR | 282-299 | 7.378 |
| NtrC | 295-311 | 7.221 |
| DeoR | 1-16 | 7.152 |
| MalT | 69-78 | 7.065 |
| H-NS | 327-341 | 6.903 |
| NarP | 251-257 | 6.421 |
| RhaS | 148-164 | 6.344 |
| MetJ | 89-96 | 6.310 |
| FNR | 304-325 | 6.305 |
| Ada | 235-262 | 6.239 |
| Fis | 136-156 | 6.023 |
| DnaA | 387-395 | 5.959 |
| CpxR | 17-31 | 5.916 |
| AraC | 136-153 | 5.713 |
| LacI | 49-69 | 5.421 |
| IdnR | 250-265 | 5.344 |
| GalS | 140-155 | 5.320 |
| GalR | 140-155 | 5.320 |
| NagC | 300-322 | 5.228 |
| GlpR | 375-394 | 5.209 |
| UlaR | 133-152 | 5.143 |
| TyrR | 138-159 | 5.097 |