| TF name | Position | PWM scan score |
| MarA | 376-396 | 11.217 |
| FNR | 149-170 | 9.768 |
| CytR | 279-318 | 9.626 |
| PhoP | 382-398 | 9.490 |
| SoxS | 378-395 | 9.102 |
| OmpR | 301-320 | 9.087 |
| UxuR | 152-169 | 8.933 |
| XylR | 311-328 | 8.915 |
| CpxR | 131-145 | 8.831 |
| DnaA | 154-162 | 8.717 |
| IHF | 324-336 | 8.548 |
| UlaR | 291-310 | 8.250 |
| DeoR | 172-187 | 7.900 |
| MetR | 169-192 | 7.613 |
| Nac | 292-306 | 7.355 |
| PspF | 13-29 | 7.178 |
| TorR | 369-378 | 7.167 |
| CRP | 375-396 | 7.046 |
| NagC | 301-323 | 6.832 |
| H-NS | 385-399 | 6.804 |
| Lrp | 269-280 | 6.793 |
| AgaR | 368-391 | 6.399 |
| NarL | 37-43 | 6.388 |
| Fis | 153-173 | 6.331 |
| IdnR | 207-222 | 6.325 |
| RcsB | 267-280 | 5.998 |
| PurR | 144-159 | 5.989 |
| MalT | 55-64 | 5.904 |
| FadR | 46-62 | 5.859 |
| CueR | 343-361 | 5.519 |
| Rob | 212-232 | 5.479 |
| ArgP | 368-380 | 5.304 |
| NarP | 68-74 | 5.154 |