| TF name | Position | PWM scan score |
| CueR | 232-250 | 11.743 |
| MetR | 310-333 | 10.874 |
| NtrC | 80-96 | 10.710 |
| AraC | 361-378 | 10.283 |
| XylR | 106-123 | 10.215 |
| RhaS | 171-187 | 9.070 |
| DnaA | 127-135 | 8.763 |
| TyrR | 354-375 | 8.530 |
| MalT | 283-292 | 8.124 |
| Nac | 357-371 | 7.938 |
| Fis | 18-38 | 7.564 |
| FNR | 330-351 | 7.537 |
| ArgP | 372-384 | 6.953 |
| NagC | 351-373 | 6.897 |
| IHF | 198-210 | 6.709 |
| IdnR | 285-300 | 6.642 |
| NarL | 111-117 | 6.331 |
| UlaR | 356-375 | 6.309 |
| DeoR | 315-330 | 6.257 |
| CysB | 96-137 | 6.253 |
| OxyR | 28-72 | 6.217 |
| SoxS | 315-332 | 6.191 |
| MetJ | 77-84 | 6.138 |
| H-NS | 339-353 | 6.097 |
| ModE | 269-295 | 5.498 |
| MelR | 265-282 | 5.337 |
| NarP | 171-177 | 5.073 |