| TF name | Position | PWM scan score |
| UxuR | 110-127 | 10.654 |
| PhoB | 107-126 | 10.009 |
| SoxS | 44-61 | 9.671 |
| NarL | 305-311 | 8.755 |
| DnaA | 313-321 | 8.389 |
| CueR | 214-232 | 8.228 |
| Lrp | 55-66 | 7.964 |
| AgaR | 174-197 | 7.804 |
| Fis | 99-119 | 7.476 |
| CpxR | 178-192 | 7.411 |
| NarP | 298-304 | 7.352 |
| ArgR | 113-128 | 7.274 |
| MalT | 219-228 | 7.197 |
| PurR | 81-96 | 7.113 |
| UlaR | 289-308 | 7.113 |
| AraC | 50-67 | 7.111 |
| MetR | 226-249 | 6.895 |
| IHF | 62-74 | 6.810 |
| RhaS | 38-54 | 6.699 |
| FNR | 52-73 | 6.676 |
| Nac | 296-310 | 6.645 |
| DcuR | 157-211 | 5.702 |
| TorR | 303-312 | 5.632 |
| Fur | 62-76 | 5.631 |
| FruR | 58-75 | 5.439 |
| NorR | 60-76 | 5.359 |
| Ada | 260-287 | 5.219 |
| LacI | 72-92 | 5.102 |
| CytR | 25-64 | 5.044 |