| TF name | Position | PWM scan score |
| ArcA | 328-388 | 14.349 |
| TyrR | 260-281 | 13.590 |
| Fur | 135-149 | 13.060 |
| FNR | 338-359 | 13.017 |
| MelR | 178-195 | 11.244 |
| MetR | 83-106 | 11.217 |
| Rob | 172-192 | 11.156 |
| UlaR | 88-107 | 10.962 |
| Mlc | 372-394 | 10.749 |
| OmpR | 367-386 | 10.739 |
| IHF | 181-193 | 10.162 |
| ArgR | 276-291 | 10.035 |
| Nac | 330-344 | 9.924 |
| Fis | 191-211 | 9.822 |
| CysB | 356-397 | 9.687 |
| Lrp | 277-288 | 9.590 |
| AraC | 326-343 | 9.565 |
| H-NS | 120-134 | 9.535 |
| GlpR | 134-153 | 9.055 |
| PhoP | 345-361 | 8.888 |
| OxyR | 312-356 | 8.874 |
| GcvA | 114-142 | 8.718 |
| NagC | 188-210 | 8.379 |
| XylR | 23-40 | 8.295 |
| DeoR | 375-390 | 7.943 |
| NorR | 283-299 | 7.798 |
| RcsB | 92-105 | 7.571 |
| CpxR | 374-388 | 7.537 |
| ArgP | 120-132 | 7.432 |
| FhlA | 184-223 | 7.330 |
| PurR | 136-151 | 7.214 |
| CytR | 122-161 | 7.011 |
| AgaR | 183-206 | 7.005 |
| GadE | 253-272 | 6.871 |
| DnaA | 123-131 | 6.835 |
| CueR | 164-182 | 6.722 |
| Ada | 44-71 | 6.635 |
| NarL | 279-285 | 6.515 |
| MarA | 378-398 | 6.480 |
| SoxS | 380-397 | 6.063 |
| PspF | 367-383 | 5.805 |
| PhoB | 44-63 | 5.527 |
| CRP | 281-302 | 5.403 |
| TorR | 341-350 | 5.375 |
| FadR | 221-237 | 5.307 |
| TrpR | 328-345 | 5.153 |
| LacI | 203-223 | 5.102 |