| TF name | Position | PWM scan score |
| Mlc | 367-389 | 10.927 |
| PhoB | 300-319 | 10.370 |
| FruR | 64-81 | 10.353 |
| MelR | 115-132 | 10.038 |
| GadE | 68-87 | 7.956 |
| MalT | 55-64 | 7.700 |
| Fis | 310-330 | 7.655 |
| OmpR | 171-190 | 7.528 |
| AraC | 40-57 | 7.525 |
| Rob | 88-108 | 7.425 |
| MarA | 170-190 | 7.250 |
| RhaS | 310-326 | 7.241 |
| SoxS | 361-378 | 7.185 |
| Lrp | 173-184 | 7.183 |
| DnaA | 50-58 | 7.095 |
| IHF | 180-192 | 7.045 |
| LacI | 172-192 | 6.944 |
| RcsB | 262-275 | 6.747 |
| GlpR | 236-255 | 6.733 |
| CueR | 329-347 | 6.656 |
| MetJ | 40-47 | 6.471 |
| H-NS | 384-398 | 6.346 |
| NarP | 223-229 | 6.275 |
| GntR | 208-227 | 6.238 |
| TyrR | 228-249 | 6.114 |
| LexA | 230-249 | 6.107 |
| NarL | 93-99 | 6.105 |
| NtrC | 230-246 | 5.899 |
| Fur | 95-109 | 5.834 |