| TF name | Position | PWM scan score |
| GadE | 380-399 | 19.495 |
| RcsB | 93-106 | 10.055 |
| PurR | 260-275 | 9.832 |
| NarP | 242-248 | 9.705 |
| Nac | 94-108 | 8.941 |
| ArgP | 384-396 | 8.904 |
| Rob | 379-399 | 8.902 |
| MalT | 112-121 | 8.813 |
| H-NS | 381-395 | 8.607 |
| Lrp | 133-144 | 8.093 |
| OmpR | 93-112 | 8.076 |
| IHF | 131-143 | 7.791 |
| XylR | 375-392 | 7.357 |
| CpxR | 18-32 | 7.223 |
| CueR | 32-50 | 6.681 |
| PhoB | 82-101 | 6.394 |
| ModE | 122-148 | 6.205 |
| UxuR | 310-327 | 6.088 |
| NarL | 345-351 | 5.415 |
| MetJ | 182-189 | 5.350 |
| FNR | 376-397 | 5.249 |
| CysB | 298-339 | 5.149 |