| TF name | Position | PWM scan score |
| ArcA | 332-392 | 19.820 |
| AgaR | 346-369 | 18.627 |
| GcvA | 176-204 | 14.783 |
| CysB | 349-390 | 14.342 |
| UlaR | 362-381 | 12.583 |
| OxyR | 29-73 | 10.972 |
| ModE | 348-374 | 10.888 |
| ArgR | 319-334 | 10.844 |
| GadE | 42-61 | 10.605 |
| CytR | 324-363 | 10.385 |
| Rob | 357-377 | 10.363 |
| H-NS | 154-168 | 10.106 |
| Fis | 157-177 | 10.088 |
| ArgP | 147-159 | 9.825 |
| PhoB | 211-230 | 9.701 |
| MarA | 35-55 | 9.392 |
| OmpR | 369-388 | 9.295 |
| Fur | 348-362 | 9.171 |
| NorR | 331-347 | 9.015 |
| PurR | 344-359 | 8.797 |
| CRP | 148-169 | 8.460 |
| FNR | 371-392 | 8.301 |
| CpxR | 324-338 | 8.191 |
| NarL | 222-228 | 8.190 |
| FadR | 298-314 | 8.132 |
| TorR | 358-367 | 8.087 |
| IHF | 366-378 | 8.061 |
| PspF | 336-352 | 7.856 |
| MetJ | 389-396 | 7.714 |
| NtrC | 161-177 | 7.713 |
| Lrp | 44-55 | 7.524 |
| DeoR | 127-142 | 7.482 |
| XylR | 176-193 | 7.465 |
| RcsB | 70-83 | 7.282 |
| LacI | 150-170 | 7.142 |
| GalR | 47-62 | 6.867 |
| GalS | 47-62 | 6.867 |
| Nac | 373-387 | 6.702 |
| SoxS | 37-54 | 6.596 |
| GlpR | 256-275 | 6.573 |
| NagC | 374-396 | 6.559 |
| Ada | 164-191 | 6.540 |
| Mlc | 148-170 | 6.499 |
| DnaA | 185-193 | 6.340 |
| TyrR | 355-376 | 6.141 |
| UxuR | 337-354 | 6.117 |
| MetR | 375-398 | 6.098 |
| RhaS | 272-288 | 5.949 |
| IdnR | 362-377 | 5.825 |
| GntR | 50-69 | 5.733 |
| PhoP | 355-371 | 5.623 |