| TF name | Position | PWM scan score |
| DeoR | 332-347 | 12.818 |
| CRP | 200-221 | 8.504 |
| PurR | 28-43 | 8.034 |
| Fis | 227-247 | 7.582 |
| CueR | 56-74 | 7.467 |
| Nac | 169-183 | 7.460 |
| AraC | 27-44 | 7.432 |
| RcsB | 195-208 | 7.222 |
| IHF | 272-284 | 6.853 |
| SoxS | 59-76 | 6.754 |
| MalT | 354-363 | 6.744 |
| MetJ | 209-216 | 6.732 |
| DnaA | 46-54 | 6.527 |
| ArgP | 315-327 | 6.520 |
| OmpR | 307-326 | 6.418 |
| UxuR | 65-82 | 6.407 |
| GadE | 307-326 | 6.182 |
| GalR | 127-142 | 6.120 |
| GalS | 127-142 | 6.120 |
| Lrp | 381-392 | 6.066 |
| NarL | 258-264 | 5.876 |
| NarP | 349-355 | 5.627 |
| RhaS | 161-177 | 5.566 |
| TorR | 206-215 | 5.538 |
| H-NS | 116-130 | 5.467 |
| FNR | 38-59 | 5.455 |
| NtrC | 219-235 | 5.425 |
| GlpR | 202-221 | 5.382 |
| AgaR | 14-37 | 5.377 |
| Rob | 63-83 | 5.348 |
| PhoP | 355-371 | 5.201 |