| TF name | Position | PWM scan score |
| RhaS | 187-203 | 11.979 |
| GntR | 328-347 | 11.718 |
| CRP | 330-351 | 11.255 |
| PhoB | 331-350 | 10.161 |
| Fis | 34-54 | 9.906 |
| IHF | 342-354 | 9.486 |
| FNR | 333-354 | 8.670 |
| MetJ | 145-152 | 8.530 |
| IdnR | 323-338 | 7.710 |
| H-NS | 52-66 | 7.568 |
| NarL | 142-148 | 7.080 |
| NagC | 101-123 | 6.533 |
| Nac | 370-384 | 6.518 |
| GlpR | 332-351 | 6.502 |
| ArgP | 345-357 | 6.498 |
| GalS | 278-293 | 6.476 |
| GalR | 278-293 | 6.476 |
| AraC | 58-75 | 6.370 |
| FruR | 338-355 | 6.230 |
| NtrC | 336-352 | 5.972 |
| DeoR | 116-131 | 5.940 |
| SoxS | 78-95 | 5.769 |
| MelR | 80-97 | 5.761 |
| GcvA | 20-48 | 5.757 |
| Rob | 51-71 | 5.737 |
| Lrp | 60-71 | 5.666 |
| ArgR | 338-353 | 5.621 |
| FadR | 216-232 | 5.599 |
| NarP | 353-359 | 5.581 |
| GadE | 373-392 | 5.366 |
| RcsB | 27-40 | 5.354 |
| XylR | 176-193 | 5.322 |
| MalT | 356-365 | 5.174 |
| TorR | 345-354 | 5.010 |