| TF name | Position | PWM scan score |
| H-NS | 372-386 | 9.066 |
| NarL | 186-192 | 8.782 |
| PhoB | 238-257 | 8.729 |
| PurR | 351-366 | 8.587 |
| ModE | 373-399 | 7.893 |
| RhaS | 89-105 | 7.772 |
| MetJ | 244-251 | 7.548 |
| MarA | 329-349 | 7.362 |
| AraC | 46-63 | 6.989 |
| MalT | 85-94 | 6.795 |
| SoxS | 371-388 | 6.659 |
| LacI | 53-73 | 6.467 |
| Lrp | 313-324 | 5.699 |
| IHF | 286-298 | 5.655 |
| NarP | 158-164 | 5.552 |