| TF name | Position | PWM scan score |
| ArgP | 333-345 | 9.825 |
| DnaA | 18-26 | 9.352 |
| H-NS | 320-334 | 8.591 |
| AraC | 277-294 | 8.511 |
| SoxS | 375-392 | 8.358 |
| GlpR | 337-356 | 8.252 |
| GadE | 322-341 | 8.189 |
| MalT | 293-302 | 7.862 |
| OmpR | 308-327 | 7.702 |
| PhoB | 309-328 | 7.665 |
| CRP | 39-60 | 7.491 |
| IHF | 384-396 | 7.375 |
| Nac | 307-321 | 7.335 |
| Lrp | 329-340 | 7.183 |
| NarP | 223-229 | 6.703 |
| PhoP | 18-34 | 6.546 |
| NarL | 68-74 | 6.516 |
| TorR | 19-28 | 6.394 |
| ArgR | 334-349 | 6.230 |
| Fis | 25-45 | 5.862 |
| LacI | 368-388 | 5.094 |
| FadR | 341-357 | 5.035 |