| TF name | Position | PWM scan score |
| CysB | 168-209 | 20.296 |
| FNR | 67-88 | 13.009 |
| MarA | 320-340 | 12.427 |
| OmpR | 68-87 | 12.348 |
| CRP | 64-85 | 11.413 |
| UlaR | 251-270 | 10.745 |
| RcsB | 79-92 | 10.573 |
| AraC | 252-269 | 10.510 |
| ArgP | 301-313 | 10.173 |
| IHF | 67-79 | 10.044 |
| DnaA | 250-258 | 9.831 |
| ArcA | 236-296 | 9.751 |
| PhoB | 304-323 | 9.638 |
| GcvA | 64-92 | 9.610 |
| TrpR | 183-200 | 9.591 |
| Nac | 74-88 | 9.564 |
| ModE | 67-93 | 9.483 |
| OxyR | 156-200 | 9.271 |
| NagC | 73-95 | 8.943 |
| Fis | 376-396 | 8.648 |
| Lrp | 70-81 | 8.596 |
| H-NS | 314-328 | 8.282 |
| TorR | 251-260 | 8.245 |
| NarL | 194-200 | 8.142 |
| XylR | 342-359 | 7.853 |
| DeoR | 289-304 | 7.780 |
| PhoP | 257-273 | 7.760 |
| GlpR | 298-317 | 7.712 |
| RhaS | 199-215 | 7.577 |
| MelR | 62-79 | 7.504 |
| NtrC | 136-152 | 7.453 |
| TyrR | 161-182 | 6.791 |
| SoxS | 301-318 | 6.768 |
| GalS | 366-381 | 6.608 |
| GalR | 366-381 | 6.608 |
| Mlc | 123-145 | 6.449 |
| AgaR | 82-105 | 6.245 |
| GadE | 215-234 | 6.164 |
| FadR | 334-350 | 6.078 |
| CytR | 155-194 | 5.971 |
| Fur | 189-203 | 5.620 |
| MalT | 93-102 | 5.445 |
| ArgR | 177-192 | 5.268 |