| TF name | Position | PWM scan score |
| RhaS | 323-339 | 9.909 |
| Rob | 20-40 | 9.160 |
| NorR | 319-335 | 8.889 |
| OmpR | 262-281 | 8.270 |
| Mlc | 367-389 | 8.176 |
| AraC | 101-118 | 7.406 |
| H-NS | 340-354 | 7.330 |
| GlpR | 126-145 | 7.226 |
| NarL | 179-185 | 6.945 |
| LacI | 95-115 | 6.907 |
| Fis | 101-121 | 6.895 |
| PhoB | 373-392 | 6.767 |
| GalS | 189-204 | 6.615 |
| GalR | 189-204 | 6.615 |
| UxuR | 222-239 | 6.414 |
| FNR | 121-142 | 6.200 |
| FruR | 104-121 | 6.192 |
| DnaA | 99-107 | 6.075 |
| CytR | 354-393 | 5.886 |
| MelR | 374-391 | 5.872 |
| SoxS | 249-266 | 5.871 |
| NarP | 158-164 | 5.746 |
| Lrp | 296-307 | 5.670 |
| PhoP | 94-110 | 5.574 |
| IHF | 121-133 | 5.519 |
| FadR | 115-131 | 5.447 |
| Nac | 119-133 | 5.373 |
| MarA | 96-116 | 5.364 |
| XylR | 32-49 | 5.186 |
| DeoR | 123-138 | 5.065 |
| AgaR | 109-132 | 5.051 |