| TF name | Position | PWM scan score |
| MalT | 53-62 | 12.079 |
| TrpR | 130-147 | 10.829 |
| AraC | 165-182 | 9.040 |
| CpxR | 272-286 | 8.647 |
| NarP | 230-236 | 8.308 |
| MarA | 369-389 | 8.117 |
| FruR | 111-128 | 8.045 |
| Fis | 255-275 | 7.791 |
| Lrp | 383-394 | 7.651 |
| XylR | 99-116 | 7.636 |
| GlpR | 100-119 | 7.332 |
| H-NS | 64-78 | 7.328 |
| TorR | 100-109 | 7.010 |
| PhoP | 185-201 | 6.740 |
| MetJ | 77-84 | 6.732 |
| NarL | 260-266 | 6.678 |
| IHF | 272-284 | 6.435 |
| DnaA | 163-171 | 6.418 |
| Nac | 288-302 | 6.311 |
| DeoR | 73-88 | 6.195 |
| Rob | 80-100 | 6.019 |
| CytR | 74-113 | 5.976 |
| GalS | 110-125 | 5.781 |
| GalR | 110-125 | 5.781 |
| SoxS | 371-388 | 5.760 |
| GadE | 295-314 | 5.486 |
| LexA | 175-194 | 5.273 |
| ArgP | 163-175 | 5.126 |
| FadR | 216-232 | 5.123 |