| TF name | Position | PWM scan score |
| FNR | 343-364 | 11.083 |
| RcsB | 325-338 | 10.784 |
| TyrR | 34-55 | 10.748 |
| IdnR | 42-57 | 10.377 |
| ArgP | 351-363 | 10.245 |
| GntR | 47-66 | 9.641 |
| Rob | 133-153 | 9.472 |
| Mlc | 327-349 | 9.031 |
| H-NS | 175-189 | 8.924 |
| SoxS | 67-84 | 8.667 |
| Nac | 339-353 | 8.481 |
| DnaA | 54-62 | 8.284 |
| ArgR | 7-22 | 8.232 |
| NarP | 143-149 | 8.025 |
| AgaR | 37-60 | 7.885 |
| IHF | 46-58 | 7.823 |
| Fur | 346-360 | 7.463 |
| GadE | 9-28 | 7.405 |
| NarL | 51-57 | 7.283 |
| XylR | 8-25 | 7.270 |
| CueR | 108-126 | 7.013 |
| OmpR | 1-20 | 6.933 |
| CpxR | 128-142 | 6.746 |
| Lrp | 352-363 | 6.675 |
| CRP | 310-331 | 6.595 |
| NagC | 242-264 | 6.459 |
| PhoB | 162-181 | 6.457 |
| Fis | 66-86 | 6.452 |
| NorR | 345-361 | 6.381 |
| GcvA | 170-198 | 5.996 |
| NtrC | 337-353 | 5.950 |
| GlpR | 177-196 | 5.766 |
| UxuR | 318-335 | 5.145 |
| LexA | 131-150 | 5.125 |
| AraC | 347-364 | 5.086 |