| TF name | Position | PWM scan score |
| GcvA | 355-383 | 13.862 |
| MetR | 77-100 | 11.877 |
| ArgR | 346-361 | 11.557 |
| XylR | 234-251 | 10.597 |
| GlpR | 219-238 | 10.326 |
| CpxR | 84-98 | 9.774 |
| GntR | 335-354 | 9.601 |
| GadE | 46-65 | 9.510 |
| IHF | 334-346 | 9.148 |
| FadR | 275-291 | 8.889 |
| Fis | 351-371 | 8.883 |
| SoxS | 367-384 | 8.798 |
| MelR | 349-366 | 8.518 |
| PhoB | 209-228 | 8.147 |
| MarA | 373-393 | 8.073 |
| Lrp | 328-339 | 7.949 |
| MetJ | 138-145 | 7.644 |
| FNR | 359-380 | 7.225 |
| Rob | 284-304 | 7.197 |
| H-NS | 338-352 | 7.097 |
| RcsB | 258-271 | 7.057 |
| OmpR | 378-397 | 6.979 |
| ArcA | 331-391 | 6.847 |
| IdnR | 319-334 | 6.729 |
| RhaS | 344-360 | 6.578 |
| NarL | 328-334 | 6.534 |
| ArgP | 364-376 | 6.511 |
| CRP | 219-240 | 6.437 |
| TorR | 135-144 | 6.366 |
| PhoP | 262-278 | 6.283 |
| NarP | 124-130 | 6.076 |
| CueR | 211-229 | 5.800 |
| DnaA | 159-167 | 5.459 |
| NtrC | 258-274 | 5.269 |
| NorR | 328-344 | 5.040 |
| MalT | 37-46 | 5.034 |