| TF name | Position | PWM scan score |
| Mlc | 244-266 | 12.745 |
| OxyR | 308-352 | 12.483 |
| ArgR | 33-48 | 12.310 |
| AgaR | 6-29 | 12.007 |
| CysB | 227-268 | 11.616 |
| FNR | 152-173 | 11.213 |
| ArgP | 36-48 | 11.181 |
| DcuR | 19-73 | 10.704 |
| CpxR | 8-22 | 10.530 |
| MetJ | 96-103 | 10.318 |
| OmpR | 201-220 | 10.302 |
| Nac | 88-102 | 10.225 |
| XylR | 132-149 | 10.146 |
| CRP | 63-84 | 10.128 |
| ArcA | 272-332 | 9.984 |
| DnaA | 39-47 | 9.967 |
| GcvA | 345-373 | 9.952 |
| IHF | 8-20 | 9.911 |
| GadE | 309-328 | 9.565 |
| H-NS | 35-49 | 9.341 |
| NagC | 50-72 | 9.152 |
| Fis | 41-61 | 9.052 |
| TyrR | 283-304 | 8.626 |
| NorR | 57-73 | 8.605 |
| FruR | 121-138 | 8.557 |
| PhoB | 346-365 | 8.446 |
| TorR | 7-16 | 8.299 |
| Lrp | 241-252 | 8.044 |
| RhaS | 292-308 | 7.885 |
| GlpR | 187-206 | 7.657 |
| PhoP | 122-138 | 7.655 |
| RcsB | 239-252 | 7.592 |
| CytR | 126-165 | 7.547 |
| Fur | 374-388 | 7.462 |
| AraC | 117-134 | 7.218 |
| IdnR | 312-327 | 7.032 |
| SoxS | 119-136 | 6.768 |
| Rob | 305-325 | 6.527 |
| MelR | 13-30 | 6.434 |
| DeoR | 17-32 | 6.186 |
| NarL | 238-244 | 6.131 |
| UlaR | 11-30 | 5.574 |
| Ada | 268-295 | 5.022 |