| TF name | Position | PWM scan score |
| UlaR | 28-47 | 15.004 |
| ArgR | 334-349 | 13.788 |
| ArcA | 334-394 | 13.498 |
| MetJ | 293-300 | 11.690 |
| CytR | 347-386 | 11.539 |
| Fur | 383-397 | 10.975 |
| OxyR | 314-358 | 9.829 |
| Nac | 232-246 | 9.674 |
| GadE | 272-291 | 9.110 |
| IHF | 377-389 | 9.017 |
| FNR | 368-389 | 8.926 |
| TorR | 233-242 | 8.515 |
| CpxR | 325-339 | 8.506 |
| Rob | 318-338 | 8.357 |
| NarP | 100-106 | 8.308 |
| AraC | 346-363 | 8.272 |
| PhoP | 380-396 | 8.215 |
| PspF | 351-367 | 8.121 |
| CRP | 222-243 | 8.102 |
| ArgP | 275-287 | 7.883 |
| OmpR | 361-380 | 7.833 |
| SoxS | 267-284 | 7.670 |
| Mlc | 362-384 | 7.585 |
| GntR | 37-56 | 7.565 |
| H-NS | 373-387 | 6.976 |
| LexA | 266-285 | 6.949 |
| Fis | 262-282 | 6.924 |
| DnaA | 367-375 | 6.913 |
| MarA | 265-285 | 6.787 |
| NarL | 388-394 | 6.718 |
| RcsB | 94-107 | 6.599 |
| MelR | 28-45 | 6.179 |
| Lrp | 36-47 | 6.129 |
| UxuR | 45-62 | 5.997 |
| PhoB | 373-392 | 5.994 |
| TyrR | 11-32 | 5.934 |
| Ada | 334-361 | 5.824 |
| GalS | 332-347 | 5.480 |
| GalR | 332-347 | 5.480 |
| FadR | 189-205 | 5.462 |
| PurR | 183-198 | 5.353 |
| IdnR | 239-254 | 5.203 |
| GcvA | 314-342 | 5.120 |
| GlpR | 20-39 | 5.083 |