| TF name | Position | PWM scan score |
| ArcA | 34-94 | 16.434 |
| OmpR | 231-250 | 13.983 |
| CysB | 1-42 | 13.934 |
| PhoB | 148-167 | 13.425 |
| NagC | 40-62 | 11.817 |
| FNR | 128-149 | 11.437 |
| DcuR | 282-336 | 11.250 |
| AgaR | 58-81 | 11.144 |
| ModE | 42-68 | 11.005 |
| GadE | 244-263 | 10.683 |
| H-NS | 273-287 | 10.329 |
| RhaS | 249-265 | 10.091 |
| Mlc | 310-332 | 9.978 |
| ArgP | 127-139 | 9.781 |
| AraC | 57-74 | 9.664 |
| NorR | 21-37 | 9.457 |
| TyrR | 237-258 | 9.310 |
| IHF | 56-68 | 9.069 |
| UxuR | 289-306 | 8.848 |
| Nac | 39-53 | 8.776 |
| RcsB | 63-76 | 8.492 |
| ArgR | 320-335 | 8.070 |
| TorR | 144-153 | 7.699 |
| Lrp | 59-70 | 7.514 |
| LacI | 328-348 | 7.406 |
| NarL | 48-54 | 6.944 |
| DnaA | 354-362 | 6.896 |
| MelR | 199-216 | 6.779 |
| PspF | 288-304 | 6.748 |
| XylR | 30-47 | 6.722 |
| CytR | 297-336 | 6.716 |
| UlaR | 88-107 | 6.673 |
| CueR | 184-202 | 6.623 |
| PhoP | 205-221 | 6.550 |
| CRP | 367-388 | 6.493 |
| Ada | 110-137 | 6.478 |
| Fis | 43-63 | 6.346 |
| DeoR | 121-136 | 6.023 |
| FhlA | 103-142 | 5.687 |
| GcvA | 320-348 | 5.667 |
| NarP | 178-184 | 5.606 |
| Fur | 3-17 | 5.514 |
| Rob | 126-146 | 5.205 |
| GlpR | 62-81 | 5.195 |