| TF name | Position | PWM scan score |
| FNR | 376-397 | 13.354 |
| ArcA | 34-94 | 12.345 |
| RcsB | 377-390 | 11.333 |
| IHF | 40-52 | 10.253 |
| XylR | 352-369 | 9.579 |
| AgaR | 104-127 | 9.147 |
| MetJ | 373-380 | 8.962 |
| CRP | 142-163 | 8.832 |
| Rob | 77-97 | 8.810 |
| PhoB | 64-83 | 8.753 |
| GntR | 98-117 | 8.557 |
| CysB | 340-381 | 8.384 |
| Ada | 43-70 | 8.348 |
| Nac | 51-65 | 8.232 |
| Fis | 228-248 | 7.694 |
| IdnR | 58-73 | 7.652 |
| PhoP | 229-245 | 7.645 |
| CpxR | 279-293 | 7.637 |
| SoxS | 330-347 | 7.623 |
| GcvA | 166-194 | 7.544 |
| MetR | 325-348 | 7.464 |
| TorR | 36-45 | 7.293 |
| Lrp | 350-361 | 7.131 |
| DcuR | 56-110 | 6.830 |
| GlpR | 45-64 | 6.773 |
| AraC | 105-122 | 6.651 |
| NarP | 192-198 | 6.598 |
| UlaR | 52-71 | 6.541 |
| NarL | 361-367 | 6.515 |
| MelR | 334-351 | 6.420 |
| FadR | 131-147 | 6.412 |
| OmpR | 33-52 | 6.373 |
| NorR | 135-151 | 6.322 |
| Mlc | 117-139 | 6.295 |
| MarA | 70-90 | 5.908 |
| NtrC | 108-124 | 5.639 |
| ModE | 46-72 | 5.570 |
| H-NS | 353-367 | 5.494 |
| UxuR | 163-180 | 5.493 |
| ArgP | 162-174 | 5.211 |
| MalT | 308-317 | 5.204 |