| TF name | Position | PWM scan score |
| ArcA | 260-320 | 19.790 |
| GcvA | 5-33 | 15.599 |
| PhoB | 270-289 | 12.859 |
| RcsB | 298-311 | 12.442 |
| GadE | 259-278 | 12.415 |
| Mlc | 8-30 | 12.022 |
| OmpR | 282-301 | 11.319 |
| PspF | 233-249 | 10.925 |
| FNR | 276-297 | 10.902 |
| TyrR | 1-22 | 10.832 |
| SoxS | 175-192 | 10.751 |
| IHF | 359-371 | 10.717 |
| PhoP | 325-341 | 10.619 |
| AgaR | 351-374 | 10.191 |
| Rob | 304-324 | 9.936 |
| CytR | 351-390 | 9.895 |
| CysB | 298-339 | 9.726 |
| GlpR | 243-262 | 9.623 |
| NagC | 338-360 | 9.262 |
| H-NS | 86-100 | 8.959 |
| CRP | 317-338 | 8.812 |
| Lrp | 269-280 | 8.284 |
| Fis | 254-274 | 8.163 |
| ArgP | 330-342 | 8.145 |
| MelR | 314-331 | 8.095 |
| ModE | 367-393 | 7.954 |
| UlaR | 237-256 | 7.828 |
| MarA | 204-224 | 7.824 |
| NorR | 303-319 | 7.707 |
| XylR | 294-311 | 7.627 |
| Nac | 328-342 | 7.510 |
| TorR | 240-249 | 7.089 |
| ArgR | 1-16 | 7.001 |
| NarL | 277-283 | 6.944 |
| AraC | 369-386 | 6.820 |
| MetJ | 64-71 | 6.390 |
| OxyR | 318-362 | 6.143 |
| GntR | 336-355 | 6.108 |
| CpxR | 96-110 | 5.494 |
| GalR | 215-230 | 5.444 |
| GalS | 215-230 | 5.444 |
| MetR | 344-367 | 5.418 |
| IdnR | 164-179 | 5.344 |
| NtrC | 44-60 | 5.212 |
| PurR | 44-59 | 5.105 |
| Fur | 329-343 | 5.005 |