| TF name | Position | PWM scan score |
| MarA | 373-393 | 14.735 |
| AraC | 110-127 | 14.720 |
| CysB | 128-169 | 14.074 |
| RcsB | 143-156 | 13.588 |
| ArcA | 277-337 | 11.715 |
| Mlc | 305-327 | 11.171 |
| IHF | 191-203 | 10.665 |
| Fur | 210-224 | 10.644 |
| CpxR | 191-205 | 10.423 |
| ArgR | 112-127 | 9.496 |
| AgaR | 288-311 | 9.440 |
| H-NS | 379-393 | 9.340 |
| OmpR | 301-320 | 9.230 |
| ArgP | 387-399 | 8.997 |
| NagC | 366-388 | 8.890 |
| PspF | 115-131 | 8.337 |
| Lrp | 112-123 | 8.237 |
| GadE | 149-168 | 8.156 |
| Fis | 296-316 | 8.104 |
| Nac | 292-306 | 8.103 |
| SoxS | 382-399 | 7.902 |
| ModE | 161-187 | 7.782 |
| GlpR | 230-249 | 7.698 |
| NarP | 216-222 | 7.585 |
| CRP | 372-393 | 7.429 |
| DnaA | 295-303 | 7.116 |
| FNR | 124-145 | 7.007 |
| MetR | 104-127 | 6.937 |
| CytR | 186-225 | 6.931 |
| GcvA | 324-352 | 6.928 |
| TorR | 378-387 | 6.861 |
| NarL | 298-304 | 6.678 |
| PhoB | 14-33 | 6.565 |
| XylR | 256-273 | 6.555 |
| RhaS | 322-338 | 6.283 |
| UxuR | 200-217 | 6.163 |
| IdnR | 296-311 | 6.146 |
| GalR | 44-59 | 6.068 |
| GalS | 44-59 | 6.068 |
| Rob | 244-264 | 6.058 |
| DeoR | 123-138 | 6.019 |
| GntR | 325-344 | 5.813 |
| UlaR | 296-315 | 5.742 |
| DcuR | 90-144 | 5.366 |
| PhoP | 53-69 | 5.301 |
| Ada | 283-310 | 5.139 |