| TF name | Position | PWM scan score |
| ModE | 351-377 | 12.584 |
| OxyR | 241-285 | 12.401 |
| ArcA | 41-101 | 12.149 |
| FNR | 204-225 | 10.905 |
| TorR | 365-374 | 10.528 |
| TyrR | 201-222 | 9.855 |
| IHF | 96-108 | 9.797 |
| Fis | 267-287 | 9.764 |
| XylR | 56-73 | 9.566 |
| DnaA | 177-185 | 8.977 |
| CpxR | 86-100 | 8.913 |
| OmpR | 243-262 | 8.770 |
| MetJ | 289-296 | 8.672 |
| H-NS | 275-289 | 8.625 |
| GadE | 366-385 | 8.453 |
| Ada | 191-218 | 8.157 |
| NarP | 344-350 | 8.154 |
| CysB | 275-316 | 8.099 |
| NagC | 262-284 | 8.013 |
| Lrp | 174-185 | 7.957 |
| UxuR | 34-51 | 7.917 |
| SoxS | 180-197 | 7.351 |
| DcuR | 35-89 | 7.110 |
| Nac | 255-269 | 6.988 |
| ArgR | 327-342 | 6.920 |
| PhoB | 154-173 | 6.906 |
| GalS | 15-30 | 6.674 |
| GalR | 15-30 | 6.674 |
| CRP | 11-32 | 6.540 |
| ArgP | 262-274 | 6.511 |
| DeoR | 86-101 | 6.478 |
| AraC | 41-58 | 6.466 |
| NarL | 34-40 | 6.415 |
| MetR | 88-111 | 6.399 |
| MelR | 38-55 | 6.329 |
| PhoP | 63-79 | 6.327 |
| GlpR | 359-378 | 5.708 |
| PurR | 251-266 | 5.699 |
| TrpR | 361-378 | 5.694 |
| NtrC | 190-206 | 5.666 |
| CueR | 23-41 | 5.279 |
| GntR | 206-225 | 5.156 |
| Fur | 250-264 | 5.148 |
| UlaR | 11-30 | 5.065 |