| TF name | Position | PWM scan score |
| AraC | 358-375 | 18.000 |
| CysB | 357-398 | 15.451 |
| DeoR | 321-336 | 13.744 |
| RcsB | 279-292 | 13.471 |
| H-NS | 141-155 | 12.976 |
| ArcA | 75-135 | 12.405 |
| IHF | 120-132 | 11.391 |
| Mlc | 337-359 | 10.692 |
| Fur | 27-41 | 10.560 |
| XylR | 275-292 | 10.397 |
| CRP | 326-347 | 10.281 |
| ArgP | 241-253 | 10.267 |
| GntR | 276-295 | 10.096 |
| ModE | 98-124 | 9.967 |
| OmpR | 324-343 | 9.926 |
| Fis | 117-137 | 9.751 |
| UlaR | 176-195 | 9.746 |
| GadE | 200-219 | 8.854 |
| NarP | 154-160 | 8.841 |
| Nac | 283-297 | 8.603 |
| OxyR | 73-117 | 8.580 |
| NagC | 341-363 | 8.577 |
| SoxS | 341-358 | 8.415 |
| LexA | 373-392 | 8.391 |
| PspF | 27-43 | 8.246 |
| Lrp | 340-351 | 8.239 |
| TyrR | 221-242 | 8.231 |
| PhoP | 214-230 | 8.182 |
| ArgR | 139-154 | 7.952 |
| GalR | 311-326 | 7.400 |
| GalS | 311-326 | 7.400 |
| NarL | 104-110 | 7.310 |
| CpxR | 321-335 | 7.282 |
| GcvA | 328-356 | 7.093 |
| FNR | 111-132 | 6.966 |
| PurR | 120-135 | 6.792 |
| PhoB | 325-344 | 6.623 |
| Ada | 322-349 | 6.509 |
| RhaS | 285-301 | 6.049 |
| TorR | 337-346 | 6.010 |
| MetR | 307-330 | 6.009 |
| CytR | 321-360 | 5.983 |
| Rob | 227-247 | 5.982 |
| LacI | 31-51 | 5.979 |
| UxuR | 185-202 | 5.862 |
| NorR | 361-377 | 5.801 |
| MarA | 376-396 | 5.693 |
| NtrC | 303-319 | 5.308 |
| FhlA | 299-338 | 5.269 |
| DnaA | 160-168 | 5.233 |
| FruR | 225-242 | 5.118 |