| TF name | Position | PWM scan score |
| OmpR | 150-169 | 17.144 |
| PurR | 122-137 | 16.566 |
| GcvA | 259-287 | 13.507 |
| GalS | 122-137 | 13.323 |
| GalR | 122-137 | 13.323 |
| Rob | 343-363 | 12.318 |
| AgaR | 68-91 | 11.941 |
| Mlc | 244-266 | 11.619 |
| GadE | 255-274 | 11.097 |
| ArcA | 126-186 | 10.282 |
| XylR | 69-86 | 9.479 |
| GntR | 329-348 | 9.281 |
| Lrp | 150-161 | 9.242 |
| NagC | 246-268 | 9.210 |
| H-NS | 150-164 | 8.972 |
| MalT | 173-182 | 8.334 |
| MetJ | 30-37 | 7.980 |
| MelR | 197-214 | 7.656 |
| IHF | 259-271 | 7.630 |
| DnaA | 304-312 | 7.469 |
| TyrR | 8-29 | 7.375 |
| TorR | 69-78 | 7.359 |
| PhoB | 354-373 | 7.342 |
| PspF | 198-214 | 7.273 |
| ModE | 231-257 | 6.849 |
| Fur | 121-135 | 6.618 |
| GlpR | 32-51 | 6.550 |
| NarL | 113-119 | 6.331 |
| AraC | 157-174 | 6.331 |
| CysB | 80-121 | 6.324 |
| CytR | 229-268 | 6.287 |
| UlaR | 237-256 | 6.142 |
| SoxS | 204-221 | 6.135 |
| FNR | 349-370 | 6.110 |
| FhlA | 175-214 | 6.107 |
| NarP | 50-56 | 6.076 |
| FruR | 302-319 | 6.049 |
| CRP | 212-233 | 6.037 |
| RcsB | 228-241 | 5.863 |
| ArgP | 149-161 | 5.659 |
| ArgR | 113-128 | 5.570 |
| CpxR | 160-174 | 5.441 |
| DcuR | 201-255 | 5.368 |
| Ada | 148-175 | 5.366 |
| Fis | 299-319 | 5.342 |
| MetR | 232-255 | 5.333 |
| LacI | 246-266 | 5.214 |