| TF name | Position | PWM scan score |
| OmpR | 376-395 | 12.233 |
| DnaA | 172-180 | 11.725 |
| GntR | 227-246 | 11.501 |
| CRP | 344-365 | 11.369 |
| GcvA | 369-397 | 11.177 |
| UxuR | 368-385 | 11.176 |
| PhoB | 26-45 | 10.712 |
| ArcA | 329-389 | 10.526 |
| Fis | 235-255 | 10.504 |
| CytR | 57-96 | 10.483 |
| Rob | 164-184 | 10.004 |
| Nac | 378-392 | 9.823 |
| FNR | 164-185 | 9.765 |
| PhoP | 372-388 | 9.610 |
| MelR | 156-173 | 9.169 |
| IHF | 55-67 | 9.039 |
| UlaR | 170-189 | 8.749 |
| AraC | 116-133 | 8.080 |
| ArgP | 370-382 | 8.067 |
| SoxS | 370-387 | 7.933 |
| H-NS | 243-257 | 7.790 |
| MetR | 46-69 | 7.680 |
| MarA | 107-127 | 7.655 |
| FadR | 70-86 | 7.525 |
| GlpR | 281-300 | 7.384 |
| NarP | 189-195 | 7.162 |
| Lrp | 238-249 | 7.103 |
| PspF | 329-345 | 7.095 |
| NarL | 381-387 | 6.854 |
| DeoR | 73-88 | 6.822 |
| XylR | 162-179 | 6.718 |
| CueR | 17-35 | 6.656 |
| Ada | 362-389 | 6.640 |
| RcsB | 379-392 | 6.239 |
| GadE | 351-370 | 6.178 |
| NorR | 369-385 | 5.971 |
| NagC | 341-363 | 5.966 |
| LacI | 2-22 | 5.789 |
| Mlc | 168-190 | 5.706 |
| Fur | 235-249 | 5.537 |
| TrpR | 240-257 | 5.418 |
| OxyR | 306-350 | 5.272 |
| ArgR | 371-386 | 5.205 |