| TF name | Position | PWM scan score |
| CysB | 144-185 | 17.536 |
| GcvA | 324-352 | 12.916 |
| MelR | 7-24 | 12.441 |
| SoxS | 181-198 | 12.400 |
| ArgP | 113-125 | 12.018 |
| AgaR | 183-206 | 11.994 |
| AraC | 44-61 | 11.941 |
| ArcA | 157-217 | 11.494 |
| CRP | 223-244 | 11.324 |
| FNR | 226-247 | 11.283 |
| FadR | 76-92 | 11.022 |
| H-NS | 67-81 | 10.764 |
| IHF | 190-202 | 10.657 |
| PhoB | 81-100 | 10.269 |
| TyrR | 59-80 | 9.966 |
| ArgR | 172-187 | 9.942 |
| LexA | 305-324 | 9.880 |
| OmpR | 257-276 | 9.679 |
| MarA | 224-244 | 9.555 |
| DnaA | 189-197 | 9.275 |
| ModE | 314-340 | 9.216 |
| Rob | 167-187 | 9.214 |
| NagC | 100-122 | 8.966 |
| TorR | 306-315 | 8.822 |
| GadE | 344-363 | 8.622 |
| PhoP | 108-124 | 8.365 |
| LacI | 260-280 | 8.147 |
| CytR | 188-227 | 8.084 |
| Nac | 213-227 | 7.868 |
| Fis | 304-324 | 7.753 |
| GlpR | 341-360 | 7.637 |
| CpxR | 99-113 | 7.552 |
| MetR | 38-61 | 7.379 |
| Mlc | 160-182 | 7.361 |
| DeoR | 317-332 | 7.171 |
| IdnR | 86-101 | 7.032 |
| Fur | 266-280 | 6.921 |
| OxyR | 323-367 | 6.802 |
| NorR | 189-205 | 6.732 |
| XylR | 117-134 | 6.731 |
| UlaR | 147-166 | 6.588 |
| NarP | 379-385 | 6.562 |
| RcsB | 322-335 | 6.557 |
| Lrp | 353-364 | 6.395 |
| Ada | 178-205 | 6.321 |
| NarL | 320-326 | 6.065 |
| UxuR | 56-73 | 5.862 |
| MetJ | 311-318 | 5.500 |
| PspF | 106-122 | 5.440 |
| GntR | 156-175 | 5.341 |
| RhaS | 359-375 | 5.184 |