| TF name | Position | PWM scan score |
| AraC | 122-139 | 11.252 |
| SoxS | 103-120 | 11.011 |
| MetR | 116-139 | 10.988 |
| Fis | 293-313 | 9.201 |
| NtrC | 73-89 | 9.085 |
| DnaA | 364-372 | 9.055 |
| RcsB | 71-84 | 8.880 |
| ArgP | 75-87 | 8.864 |
| NarP | 321-327 | 8.841 |
| GadE | 76-95 | 8.754 |
| Lrp | 43-54 | 8.566 |
| PhoB | 218-237 | 8.239 |
| MelR | 226-243 | 6.940 |
| OmpR | 228-247 | 6.858 |
| NarL | 75-81 | 6.854 |
| DeoR | 263-278 | 6.784 |
| H-NS | 30-44 | 6.776 |
| FNR | 181-202 | 6.767 |
| MalT | 356-365 | 6.581 |
| FadR | 103-119 | 6.356 |
| PhoP | 103-119 | 5.977 |
| AgaR | 29-52 | 5.936 |
| CRP | 22-43 | 5.758 |
| ArcA | 214-274 | 5.719 |
| IdnR | 314-329 | 5.667 |
| XylR | 125-142 | 5.478 |
| TyrR | 124-145 | 5.253 |
| ModE | 150-176 | 5.226 |
| MarA | 213-233 | 5.067 |
| IHF | 105-117 | 5.046 |