| TF name | Position | PWM scan score |
| OmpR | 365-384 | 11.907 |
| ArgP | 380-392 | 11.194 |
| ArcA | 330-390 | 9.386 |
| H-NS | 368-382 | 8.954 |
| ArgR | 377-392 | 8.912 |
| CueR | 300-318 | 8.769 |
| NarL | 387-393 | 8.353 |
| DnaA | 209-217 | 8.238 |
| Nac | 355-369 | 7.700 |
| RhaS | 54-70 | 7.689 |
| AgaR | 328-351 | 7.518 |
| DeoR | 347-362 | 7.286 |
| FruR | 177-194 | 7.218 |
| SoxS | 380-397 | 7.152 |
| GadE | 369-388 | 6.485 |
| IHF | 385-397 | 6.364 |
| Lrp | 365-376 | 6.164 |
| GalR | 40-55 | 6.144 |
| GalS | 40-55 | 6.144 |
| UlaR | 343-362 | 5.912 |
| NagC | 346-368 | 5.879 |
| Fis | 371-391 | 5.720 |
| MarA | 362-382 | 5.554 |
| MetJ | 211-218 | 5.539 |
| CpxR | 180-194 | 5.453 |
| RcsB | 377-390 | 5.428 |
| MalT | 140-149 | 5.242 |
| NorR | 341-357 | 5.189 |
| PurR | 133-148 | 5.119 |