| TF name | Position | PWM scan score |
| ModE | 299-325 | 12.648 |
| ArgR | 306-321 | 12.481 |
| FadR | 19-35 | 10.390 |
| OxyR | 189-233 | 10.004 |
| MarA | 294-314 | 9.820 |
| DnaA | 15-23 | 9.644 |
| CytR | 15-54 | 9.423 |
| IHF | 118-130 | 8.710 |
| SoxS | 296-313 | 8.686 |
| XylR | 6-23 | 8.629 |
| MalT | 88-97 | 8.178 |
| NagC | 140-162 | 8.159 |
| AgaR | 204-227 | 7.871 |
| NarL | 297-303 | 7.713 |
| Lrp | 10-21 | 7.680 |
| AraC | 304-321 | 7.430 |
| GadE | 212-231 | 7.296 |
| TrpR | 328-345 | 7.156 |
| Nac | 296-310 | 6.777 |
| UlaR | 151-170 | 6.749 |
| Fis | 300-320 | 6.550 |
| H-NS | 286-300 | 6.374 |
| CueR | 363-381 | 6.366 |
| FNR | 118-139 | 6.239 |
| NarP | 282-288 | 6.040 |
| GcvA | 292-320 | 5.950 |
| RhaS | 37-53 | 5.871 |
| ArgP | 8-20 | 5.690 |
| OmpR | 300-319 | 5.656 |
| Ada | 268-295 | 5.514 |
| Mlc | 108-130 | 5.505 |
| MetJ | 337-344 | 5.316 |
| GntR | 82-101 | 5.305 |
| ArcA | 201-261 | 5.098 |
| Rob | 24-44 | 5.096 |
| TorR | 121-130 | 5.010 |