| TF name | Position | PWM scan score |
| OmpR | 374-393 | 13.255 |
| CysB | 93-134 | 11.489 |
| GadE | 378-397 | 11.448 |
| GcvA | 313-341 | 11.097 |
| PhoB | 366-385 | 10.666 |
| ArcA | 45-105 | 10.586 |
| UxuR | 165-182 | 10.584 |
| Nac | 243-257 | 10.572 |
| H-NS | 319-333 | 9.884 |
| IHF | 182-194 | 9.835 |
| AraC | 96-113 | 9.372 |
| TyrR | 244-265 | 9.071 |
| DeoR | 76-91 | 8.787 |
| NarL | 40-46 | 8.755 |
| PhoP | 57-73 | 8.567 |
| TorR | 295-304 | 7.995 |
| CRP | 123-144 | 7.865 |
| NarP | 90-96 | 7.585 |
| Fis | 237-257 | 7.394 |
| MarA | 305-325 | 7.363 |
| ModE | 216-242 | 7.327 |
| MelR | 51-68 | 7.002 |
| CpxR | 170-184 | 6.927 |
| Lrp | 314-325 | 6.893 |
| CytR | 88-127 | 6.819 |
| Fur | 368-382 | 6.761 |
| UlaR | 109-128 | 6.740 |
| RcsB | 129-142 | 6.662 |
| NorR | 97-113 | 6.641 |
| PspF | 53-69 | 6.417 |
| FNR | 368-389 | 6.413 |
| AgaR | 93-116 | 6.078 |
| NagC | 59-81 | 5.918 |
| Rob | 80-100 | 5.891 |
| LacI | 329-349 | 5.722 |
| DnaA | 88-96 | 5.436 |
| PurR | 78-93 | 5.368 |
| SoxS | 377-394 | 5.280 |
| MalT | 150-159 | 5.236 |
| GalR | 246-261 | 5.211 |
| GalS | 246-261 | 5.211 |