| TF name | Position | PWM scan score |
| ArcA | 37-97 | 14.928 |
| GntR | 105-124 | 13.647 |
| OmpR | 61-80 | 13.630 |
| NagC | 285-307 | 13.144 |
| Fur | 276-290 | 12.231 |
| GcvA | 276-304 | 12.026 |
| XylR | 278-295 | 11.994 |
| CpxR | 102-116 | 11.877 |
| Mlc | 278-300 | 11.596 |
| PspF | 273-289 | 11.016 |
| FNR | 246-267 | 10.947 |
| UlaR | 379-398 | 10.886 |
| Lrp | 61-72 | 9.365 |
| GadE | 66-85 | 8.822 |
| NarL | 382-388 | 8.326 |
| Rob | 318-338 | 7.955 |
| GlpR | 284-303 | 7.932 |
| IHF | 279-291 | 7.913 |
| AraC | 91-108 | 7.816 |
| H-NS | 61-75 | 7.744 |
| PhoB | 299-318 | 7.713 |
| DnaA | 66-74 | 7.683 |
| DeoR | 196-211 | 7.676 |
| RcsB | 331-344 | 7.616 |
| AgaR | 364-387 | 7.465 |
| CRP | 276-297 | 7.400 |
| GalR | 160-175 | 7.310 |
| GalS | 160-175 | 7.310 |
| NorR | 370-386 | 7.186 |
| PhoP | 239-255 | 6.828 |
| DcuR | 262-316 | 6.776 |
| TyrR | 8-29 | 6.523 |
| CytR | 49-88 | 6.413 |
| Fis | 336-356 | 6.332 |
| ArgP | 63-75 | 6.281 |
| OxyR | 45-89 | 6.234 |
| Nac | 62-76 | 6.224 |
| FadR | 332-348 | 5.934 |
| SoxS | 374-391 | 5.814 |
| CueR | 144-162 | 5.692 |
| ArgR | 8-23 | 5.657 |
| MelR | 2-19 | 5.633 |
| UxuR | 245-262 | 5.543 |
| CysB | 282-323 | 5.462 |
| MarA | 69-89 | 5.459 |
| FhlA | 169-208 | 5.446 |
| PurR | 160-175 | 5.245 |
| FruR | 12-29 | 5.161 |